PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G273400.1
Common NamePHAVU_007G273400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 255aa    MW: 29100.4 Da    PI: 5.866
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G273400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.8e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd+ l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  Phvul.007G273400.1 14 KGPWTQEEDQTLISYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP
2Myb_DNA-binding51.42.6e-1667112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++ eE++++++ +++lG++ W++Ia++++ gRt++++k+ w+++l
  Phvul.007G273400.1  67 RGNFSSEEEDIIIKMHELLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.719961IPR017930Myb domain
SuperFamilySSF466891.73E-3110108IPR009057Homeodomain-like
SMARTSM007177.4E-151363IPR001005SANT/Myb domain
PfamPF002494.2E-171461IPR001005SANT/Myb domain
CDDcd001674.77E-111661No hitNo description
PROSITE profilePS5129425.31162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2665116IPR009057Homeodomain-like
SMARTSM007171.5E-1466114IPR001005SANT/Myb domain
PfamPF002491.2E-1467112IPR001005SANT/Myb domain
CDDcd001675.45E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTQE EDQTLISYIQ KHGHGNWRAL PKLAGLLRCG KSCRLRWINY  60
LKPDIKRGNF SSEEEDIIIK MHELLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKKLLNSE  120
PKRVSNPKIK RSDSNSSTLT QSEPTSSSSP STTSSSEFSS FSDMNNTTMI KSEDTESEEI  180
TMPPIDESFW SEETVMPSSN SWTVSNDHHQ YQFDSVETFQ QHSFGYNGSN FDDGMDFWYD  240
IFIRSGESIE LPDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29121165108B-MYB
1h8a_C3e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G273400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7749610.0KF774961.1 Phaseolus vulgaris genotype PHA3524 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749620.0KF774962.1 Phaseolus vulgaris genotype PI290998 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749630.0KF774963.1 Phaseolus vulgaris genotype PHA2677 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749640.0KF774964.1 Phaseolus vulgaris genotype W6-17475 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749650.0KF774965.1 Phaseolus vulgaris genotype PI-290995 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749660.0KF774966.1 Phaseolus vulgaris genotype PHA3677 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749670.0KF774967.1 Phaseolus vulgaris genotype W6-17487 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749680.0KF774968.1 Phaseolus vulgaris genotype G10230 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749690.0KF774969.1 Phaseolus vulgaris genotype PI-152313 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749700.0KF774970.1 Phaseolus vulgaris genotype VARI2 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749710.0KF774971.1 Phaseolus vulgaris genotype PHA3063 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749720.0KF774972.1 Phaseolus vulgaris genotype PI-282000 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749730.0KF774973.1 Phaseolus vulgaris genotype PI-152311 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749740.0KF774974.1 Phaseolus vulgaris genotype G10234 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749750.0KF774975.1 Phaseolus vulgaris genotype PHA6999 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749760.0KF774976.1 Phaseolus vulgaris genotype G21245 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749770.0KF774977.1 Phaseolus vulgaris genotype PI-282031 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749780.0KF774978.1 Phaseolus vulgaris genotype PHA2360 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749790.0KF774979.1 Phaseolus vulgaris genotype PHA7088 myb-related protein (MYB29) gene, partial cds.
GenBankKF7749800.0KF774980.1 Phaseolus vulgaris genotype PHA2997 myb-related protein (MYB29) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145850.10.0hypothetical protein PHAVU_007G273400g
SwissprotQ9LTC43e-85MYB15_ARATH; Transcription factor MYB15
TrEMBLV7BIR00.0V7BIR0_PHAVU; Uncharacterized protein
STRINGXP_007145850.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-81myb domain protein 15
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]