PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G277300.1

Common Name

PHAVU_007G277300g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

C2H2

Protein Properties

Length: 160aa MW: 18274.7 Da PI: 6.6727

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G277300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	27	47	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+++Fs+ + L H+ +H Phvul.007G277300.1 27 CKLCKQVFSNTEALLIHLESH 47 ******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.12	25	52	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	27	47	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MTNLFYNDVL NYAHLSYLYN NTGPKGCKLC KQVFSNTEAL LIHLESHMAQ EEIAIRRLYS 60 LPQHVNYQKQ FPLQPMGDGR FFQSIGRNPF SNASQIGSSS MPIRRMQVQA QYDASMNDDG 120 SKAYILKLEK PIKHIDFIDL VNTDEDNNSL QQLDLDLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G277300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007145903.1	1e-116	hypothetical protein PHAVU_007G277300g
TrEMBL	V7BJ02	1e-115	V7BJ02_PHAVU; Uncharacterized protein
STRING	XP_007145903.1	1e-115	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15279	5	8

Link Out ? help Back to Top
Phytozome	Phvul.007G277300.1
Entrez Gene	18627262