PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.008G007400.2

Common Name

PHAVU_008G007400g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

C2H2

Protein Properties

Length: 177aa MW: 19111.3 Da PI: 9.5781

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G007400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00022	44	66	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F ++ L H++ H Phvul.008G007400.2 44 YECQYCFREFANSQALGGHQNAH 66 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.5E-4	42	70	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.86E-6	42	71	No hit	No description
PROSITE profile	PS50157	11.572	44	71	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	46	66	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MAEVEYLAKS TTLKLFGINI NKSPENQTHH QPASDSESFM ARKYECQYCF REFANSQALG 60 GHQNAHKKER QLLKRAQMQA ARGFVASHVH NTIMSTFSPQ SQPPLPWLCA PHAWSSDSGV 120 AFVTPGRRVY ATAGASVTDG RGHRNTPAEI GGFNGGNGRG NGGGERGFGL DLHLSL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G007400.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-141	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007139171.1	1e-131	hypothetical protein PHAVU_008G007400g
Refseq	XP_007139172.1	1e-131	hypothetical protein PHAVU_008G007400g
TrEMBL	V7B0W5	1e-129	V7B0W5_PHAVU; Uncharacterized protein
TrEMBL	V7B401	1e-129	V7B401_PHAVU; Uncharacterized protein
STRING	XP_007139172.1	1e-130	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58070.1	5e-14	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Phvul.008G007400.2
Entrez Gene	18621458