PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G008900.1
Common NamePHAVU_008G008900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YC
Protein Properties Length: 264aa    MW: 29805.8 Da    PI: 6.8743
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G008900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC121.43.9e-3879180299
               NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         l+sfwekq   i+ a+ fk +h+lPlari++i+k+d dv+m+sae+P+l+skace+fi elt+r+w++aee++++t++ +d+a+++ + d 
  Phvul.008G008900.1  79 LRSFWEKQlldIQAAEAFKsQHKLPLARIRRIMKTDADVQMVSAETPMLMSKACEIFIQELTFRAWMRAEESNKSTVQPCDVAKVIMQNDA 169
                         99******988899999*999********************************************************************** PP

               NF-YC  89 fdflvdivprd 99 
                           fl+divp +
  Phvul.008G008900.1 170 LHFLTDIVPDN 180
                         ********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.19E-2477173IPR009072Histone-fold
PfamPF008088.3E-17101163IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.8E-29102178IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDFRSNSISS NLVPNSMSVP SCPILHYHQE KNRERRNTFN LPLDFKGNSS STNVLSNSMS  60
IPSYPMPQYY PESIQEGKLR SFWEKQLLDI QAAEAFKSQH KLPLARIRRI MKTDADVQMV  120
SAETPMLMSK ACEIFIQELT FRAWMRAEES NKSTVQPCDV AKVIMQNDAL HFLTDIVPDN  180
LQNFCAYGAA EEEHATGNFP EGRHSSQTAL PDTAGFRNPM NMMNMSRGLG AGNQVIPQPN  240
NNNMMQPPFV MPSDQLPYNF HPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C4e-257917819118HapE
4g92_C4e-257917819118HapE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G008900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150374e-91AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139192.10.0hypothetical protein PHAVU_008G008900g
TrEMBLV7B4150.0V7B415_PHAVU; Uncharacterized protein
STRINGXP_007139192.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1821366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.36e-33nuclear factor Y, subunit C3