PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G014000.1
Common NamePHAVU_008G014000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WOX
Protein Properties Length: 268aa    MW: 30226.5 Da    PI: 5.1859
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G014000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.24.3e-2185145257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         r+R+t+t+ ql++Le+ F + + +ps+e++++++++l    +++e++V++WFqNrRa+ k+
  Phvul.008G014000.1  85 RQRWTPTAMQLQILERIFDQgTGTPSKEKIKDITAELsqhgQISETNVYNWFQNRRARSKR 145
                         89*****************99**************************************97 PP
2Wus_type_Homeobox104.47.5e-3484147265
   Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         +r+RWtPt+ Q++iLe+++++G+ tP+ke+i++itaeL+++G+i+++NV++WFQNr+aR+++kq
  Phvul.008G014000.1  84 SRQRWTPTAMQLQILERIFDQGTGTPSKEKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 147
                         689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-1779149IPR009057Homeodomain-like
PROSITE profilePS5007114.70681146IPR001356Homeobox domain
SuperFamilySSF466896.84E-1883148IPR009057Homeodomain-like
SMARTSM003897.9E-1483150IPR001356Homeobox domain
PfamPF000466.6E-1985145IPR001356Homeobox domain
CDDcd000863.03E-1385147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVNVMEWQKQ RWQPNGNAEM MYVKVMTDEQ LETLRKQIAV YATICEQLVE MHKTISSHQD  60
LAGIRLGSMY CDPLLGSGGH KIASRQRWTP TAMQLQILER IFDQGTGTPS KEKIKDITAE  120
LSQHGQISET NVYNWFQNRR ARSKRKQQNV ASGVNAESEV ETEVDSKDKK TKPDDFWSQH  180
SVSAGPSDSL GFQNHDDLQY LNENPESNKP DSVFPSDGSL RSTRNFNHVP VFDGLLSNPG  240
NGYLTGKMEA TENYDLYQPS DDFDMAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138146RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G014000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139251.10.0hypothetical protein PHAVU_008G014000g
SwissprotO817885e-79WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLV7B1260.0V7B126_PHAVU; Uncharacterized protein
STRINGXP_007139251.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-81WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]