PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G014600.1
Common NamePHAVU_008G014600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 166aa    MW: 18272.7 Da    PI: 9.0363
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G014600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00144062123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ F++   L  H  +H
  Phvul.008G014600.1 40 FECKTCNRQFPSFQALGGHRASH 62
                        89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.52E-938107No hitNo description
PfamPF139122.6E-133964IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8274067IPR007087Zinc finger, C2H2
SMARTSM003550.164062IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PfamPF139121.8E-984108IPR007087Zinc finger, C2H2
PROSITE profilePS501578.91285107IPR007087Zinc finger, C2H2
SMARTSM003550.585107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MKREREVDSV SMANCLMLLS RGGEFEASYS SSSSMSNRVF ECKTCNRQFP SFQALGGHRA  60
SHKKPRLMAS EGELLHDSPA KPKTHECSIC GLEFAIGQAL GGHMRRHRVA NLNNSTTSSS  120
GGSSVDSSSK NNKRVLVLDL NLTPFENDLE FLKIRKPTTL VDYLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G014600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0912958e-67BT091295.1 Soybean clone JCVI-FLGm-7L1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139263.11e-120hypothetical protein PHAVU_008G014600g
TrEMBLV7B0441e-118V7B044_PHAVU; Uncharacterized protein
STRINGXP_007139263.11e-119(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.13e-35C2H2 family protein