PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.008G025500.1

Common Name

PHAVU_008G025500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bHLH

Protein Properties

Length: 312aa MW: 35221 Da PI: 5.2212

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G025500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.3	5.6e-18	16	65	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq Phvul.008G025500.1 16 RSKHSETEQRRRSKINERFQVLRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 65 899***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.0E-24	13	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-20	14	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.295	14	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-15	16	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.19E-17	16	69	No hit	No description
SMART	SM00353	2.3E-13	20	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MKVDEPSTGK RVNTHRSKHS ETEQRRRSKI NERFQVLRDL IPQNDQKRDK ASFLLEVIEY 60 IQFLQEKLQI YEQSYEGWSQ EPTKLIPWRN HHGPAENPTD PSQTIQNGSV DEKNNSASPL 120 FHGNIPNPME SDFSMMTVQK GHIPCSSTDA VPLTMQMRLD MFDPVVSSGM TTQHLQESVS 180 NVDMHSHTQP QLWLDKSNKD NYILPHDSTM KEQEELVIES GSDSISSAYS QGILDTLTQV 240 LQSSGVDMSQ TNLSVQIDVG RRANAELDPS AYSSKVHENQ FVSNPAISRS GVDYCNIESE 300 QSSKRLRQEA S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G025500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031127	0.0	KT031127.1 Glycine max clone HN_CCL_217 bHLH transcription factor (Glyma18g51080.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007139391.1	0.0	hypothetical protein PHAVU_008G025500g
TrEMBL	V7B1D6	0.0	V7B1D6_PHAVU; Uncharacterized protein
STRING	XP_007139391.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	7e-59	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Phvul.008G025500.1
Entrez Gene	18621644