PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G028000.1
Common NamePHAVU_008G028000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 262aa    MW: 30132.1 Da    PI: 7.7581
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G028000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd+ll ++v ++G g+W+++a+  g++R++k+c++rw +yl
  Phvul.008G028000.1 16 KGPWTGEEDKLLSEYVCLYGEGRWSSVAKFTGLNRSGKSCRLRWVNYL 63
                        79********************************************97 PP
2Myb_DNA-binding45.32.1e-1470113247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         g  T+ E+  + ++++ lG++ W+tIa++++ gRt++++k++w+++
  Phvul.008G028000.1  70 GQLTPLEEGTIMELHAILGNK-WSTIAKYLP-GRTDNEIKNYWRTH 113
                         667999999************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-221066IPR009057Homeodomain-like
PROSITE profilePS5129422.8371167IPR017930Myb domain
SuperFamilySSF466894.12E-3014110IPR009057Homeodomain-like
SMARTSM007172.3E-141565IPR001005SANT/Myb domain
PfamPF002498.7E-161663IPR001005SANT/Myb domain
CDDcd001675.94E-111863No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2267116IPR009057Homeodomain-like
SMARTSM007172.6E-1068116IPR001005SANT/Myb domain
PROSITE profilePS5129417.42668118IPR017930Myb domain
PfamPF002499.2E-1369113IPR001005SANT/Myb domain
CDDcd001674.13E-873114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVAMMSFLST DKGWTKGPWT GEEDKLLSEY VCLYGEGRWS SVAKFTGLNR SGKSCRLRWV  60
NYLKPGLKKG QLTPLEEGTI MELHAILGNK WSTIAKYLPG RTDNEIKNYW RTHFGKREKS  120
KHKKLQRRQK EQQPKKCDFR SIMCHKDTIN ETKSFETQNN KLQEIGLMYP TIDNQYNTVP  180
SMHEGFSSTW PDTLVDDGLW FGLWDFDEPL SFADCVNQFS KCAMPNEGTF SLGGDSTQSD  240
DKTYCFDETY GNLFYGKDMF G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261611027120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G028000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-158AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139421.10.0hypothetical protein PHAVU_008G028000g
TrEMBLV7B1G20.0V7B1G2_PHAVU; Uncharacterized protein
STRINGXP_007139421.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.18e-65myb domain protein 121