PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G037000.1
Common NamePHAVU_008G037000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Dof
Protein Properties Length: 504aa    MW: 54786.5 Da    PI: 7.0072
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G037000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.57.9e-40137197262
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s+
  Phvul.008G037000.1 137 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSST 197
                         7899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-31134194IPR003851Zinc finger, Dof-type
PfamPF027012.8E-32139195IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.947141195IPR003851Zinc finger, Dof-type
PROSITE patternPS013610143179IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MSEAKDPTIK LFGKTIPLSE ITTGSAGAPA SSSGDVVDES VEQSHASSSN SSRESHTREE  60
GVVDKDSLGE KTPDNKKEDR APTQSLEEVN NLDTTSGTCE ESNALPIDKE TTTLRTSKTE  120
EELSETSKSQ DKNLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT  180
MRNVPVGAGR RKNKSSTSHY RQITVPDAAL QNPQIDLPNG AYHPSLKCNG AVLTFGSDTP  240
LCESMTSVLN LADKTVHNYP RNGFHKPEEL KIPVPHASGE KRDDQSNKSS VTSTKSAEGA  300
STNGAQEQAM PNSHSFPPQV PYFTGNSWPI PWNPVQWSSP VPPPAFCHPG FTVPFYPAAA  360
YWGCAVSGAW NIPWIAQPSS PKGATSNSGP NSPTLGKHSR EDNILKSNES GGGEDGHNKE  420
NNKEKCLWVP KTLRIDDSGD AAKSTIWTTL GIRNDKVDSV PRETLFKGFP SKLDEKNHSM  480
QASPVLQANP AALSRSLNFH ETS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G037000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139523.10.0hypothetical protein PHAVU_008G037000g
TrEMBLV7B0T60.0V7B0T6_PHAVU; Uncharacterized protein
STRINGXP_007139523.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62534147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-100cycling DOF factor 2