PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G038200.1
Common NamePHAVU_008G038200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 231aa    MW: 26373.7 Da    PI: 6.0549
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G038200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.6e-171057148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++ Ed+ll ++v+++G g W++++ + g++R++k+c++rw++yl
  Phvul.008G038200.1 10 KGAWSQSEDDLLRECVQLYGEGKWHLVPGRAGLNRCRKSCRLRWLNYL 57
                        79********************************************97 PP
2Myb_DNA-binding47.34.6e-1563107147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg ++++E +l ++++k+lG++ W++Ia +++ gRt +++k++w++ 
  Phvul.008G038200.1  63 RGDFSEDEIDLMIRLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWNTN 107
                         899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.692561IPR017930Myb domain
SuperFamilySSF466891.91E-277104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-21760IPR009057Homeodomain-like
SMARTSM007172.9E-14959IPR001005SANT/Myb domain
PfamPF002496.2E-161057IPR001005SANT/Myb domain
CDDcd001675.69E-91257No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2261112IPR009057Homeodomain-like
PROSITE profilePS5129418.32162112IPR017930Myb domain
SMARTSM007173.6E-1462110IPR001005SANT/Myb domain
PfamPF002492.0E-1363106IPR001005SANT/Myb domain
CDDcd001674.63E-966108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEGALSGVRK GAWSQSEDDL LRECVQLYGE GKWHLVPGRA GLNRCRKSCR LRWLNYLKPN  60
IKRGDFSEDE IDLMIRLHKL LGNRWSLIAG RLPGRTSNDV KNYWNTNMRR KVHSHNKDDE  120
NNNNVKESET GWKPHQVIKP VPRALPKASS LVQGKVMSSS KVGVSEGVSL GCENWWETLL  180
DEKEENIAVD DMMWFPGAKD GEFELWDEEL GSIASDFLEE TQTWSDFLLN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24101127108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G038200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2381021e-127KP238102.1 Lablab purpureus production of anthocyanin pigment 1 (pap1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139536.11e-169hypothetical protein PHAVU_008G038200g
SwissprotQ9FNV92e-55MY113_ARATH; Transcription factor MYB113
TrEMBLV7B1T91e-168V7B1T9_PHAVU; Uncharacterized protein
STRINGXP_007139536.11e-168(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-56myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]