PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G038600.1
Common NamePHAVU_008G038600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 251aa    MW: 28426.2 Da    PI: 8.2173
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G038600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161057148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++ Ed+ll ++v+++G g W++++ + g++R++k+c++rw++yl
  Phvul.008G038600.1 10 KGAWSQTEDDLLRECVQLYGEGKWHLVPGRAGLNRCRKSCRLRWLNYL 57
                        79********************************************97 PP
2Myb_DNA-binding44.34.2e-1463107147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg + ++E +l ++++k+lG++ W++Ia +++ gRt +++k++w++ 
  Phvul.008G038600.1  63 RGDFGEDEIDLMIRLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWNTN 107
                         78999*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.061561IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-21759IPR009057Homeodomain-like
SuperFamilySSF466899.77E-277104IPR009057Homeodomain-like
SMARTSM007178.3E-14959IPR001005SANT/Myb domain
PfamPF002499.3E-161057IPR001005SANT/Myb domain
CDDcd001676.36E-91257No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2160112IPR009057Homeodomain-like
SMARTSM007174.7E-1362110IPR001005SANT/Myb domain
PROSITE profilePS5129416.81962112IPR017930Myb domain
PfamPF002491.8E-1263106IPR001005SANT/Myb domain
CDDcd001671.79E-868108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEGTLSGVRK GAWSQTEDDL LRECVQLYGE GKWHLVPGRA GLNRCRKSCR LRWLNYLKPN  60
IKRGDFGEDE IDLMIRLHKL LGNRWSLIAG RLPGRTSNDV KNYWNTNMRR KVHSHNKDDK  120
NKNNVKESET CWKPHQVIKP VPRALRKASP VQGKVMSSSK VGVSEGVSLG CENWWETLLD  180
EKEENTAVDN MIWFPGAKDG AFEVWDEELG SIASDFLAEA QTLTDFLLSQ PSTFVISVAF  240
DSMGRDFNLS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24101127108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G038600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139540.10.0hypothetical protein PHAVU_008G038600g
SwissprotQ9FNV91e-55MY113_ARATH; Transcription factor MYB113
TrEMBLV7B1280.0V7B128_PHAVU; Uncharacterized protein
STRINGXP_007139540.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-55myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]