PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.008G049300.1

Common Name

PHAVU_008G049300g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Trihelix

Protein Properties

Length: 317aa MW: 35030.6 Da PI: 10.2146

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G049300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.5	1e-19	35	109	1	70
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekk 70 +Wt +e+ aLi+a+r+++ +l+r++lk+++W+ev++++ + + ++++qC++k+e+l+kry+ + ++ ++ Phvul.008G049300.1 35 CWTPEETAALIDAYRDKWYSLGRTNLKATHWQEVADAVtaqcpNASPTAKTAVQCRHKMEKLRKRYRTEIQRLRS 109 8****************************************9*********************99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-19	34	136	No hit	No description
PROSITE profile	PS50090	6.098	36	97	IPR017877	Myb-like domain
SMART	SM00595	5.4E-7	43	141	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MASPSSPTDS NPPSAVPLPL PAPPSTSSRR LPPPCWTPEE TAALIDAYRD KWYSLGRTNL 60 KATHWQEVAD AVTAQCPNAS PTAKTAVQCR HKMEKLRKRY RTEIQRLRSL PLPRLINNST 120 TASPSSWVHF KSMDSMEKGP NKPHTDTTTA TNPSTPSNNL NFPDDDNDDD LYEEFKNAPG 180 SNTRSLNKLY KNGFGSGSGS GFRIRIPAGV PNHTPSKFFS APPPGMAPRN GAKRERESDA 240 VAEMVGAIKV LRDGFVRMEQ MKMEMAREIE SMRMEMEMKR TEMILDSQQR IVEAFARAVS 300 QKRSKGKSTP SPSSQP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G049300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007139673.1	0.0	hypothetical protein PHAVU_008G049300g
TrEMBL	V7B1A8	0.0	V7B1A8_PHAVU; Uncharacterized protein
STRING	XP_007139673.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4638	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-51	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Phvul.008G049300.1
Entrez Gene	18621884