PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G052000.1
Common NamePHAVU_008G052000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 690aa    MW: 75694.5 Da    PI: 6.8313
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G052000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.2e-11253309155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Phvul.008G052000.1 253 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 309
                         57*******************4444.2455535555.779999**************98 PP
2AP246.31.1e-14352403155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Phvul.008G052000.1 352 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 403
                         57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-8253309IPR001471AP2/ERF domain
CDDcd000181.41E-19253319No hitNo description
SuperFamilySSF541711.05E-14253319IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.2E-12254318IPR001471AP2/ERF domain
SMARTSM003802.6E-22254323IPR001471AP2/ERF domain
PROSITE profilePS5103217.319254317IPR001471AP2/ERF domain
PRINTSPR003672.8E-6255266IPR001471AP2/ERF domain
PfamPF008473.6E-10352403IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18352413IPR016177DNA-binding domain
CDDcd000183.25E-25352413No hitNo description
Gene3DG3DSA:3.30.730.102.3E-18353412IPR001471AP2/ERF domain
PROSITE profilePS5103219.058353411IPR001471AP2/ERF domain
SMARTSM003807.0E-34353417IPR001471AP2/ERF domain
PRINTSPR003672.8E-6393413IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MGSMNLLGFS LSPQEHPSSQ DHPQPAPSRF GFNPDGISST DVAGDCFDLT SDSSPHLLNL  60
PSYGIYEAFH RNNSIHTTQD WKENYSSQNL LLGTSCSNQN MNNNQHQQQQ PKLENFLGGH  120
SFGEHDQTYG GNSSSTDYMF PTQPVATSGG STTSNNSIGL SMIKTWLRNQ PPHSEKNNES  180
AGNSGSVQTL SLSMSTGSQS STSLPVLSAS VENGESSSDN KQPPTTAALD TTPTGATESA  240
PRKSIDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QTRKGRQGGY DKEEKAARAY  300
DLAALKYWGT TTTTNFPISH YEKEVEEMKH MTRQEYVASL RRKSSGFSRG ASIYRGVTRH  360
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDVAAIK FRGLSAVTNF DMSRYDVKSI  420
LESTTLPIGG AAKRLKDMEH VELNVEARRT DQEDHSSNIL NNSHLTQGIS NNYAGGTTHH  480
HNWHNTLSFH QPQPQACTTM HYPYGQRLWC KQEQQDNSDT SHPLSYPDIH QLQLGNNGTH  540
NFFHTSSALH PIMNMDSGSI DNSSSSNSVV YDGYGGGGGY VMPMGATTVV ASDGDHNQRG  600
HHGFGDNEMK ALGYESVYGS NDAYHAHARN LYYLSQHQSS SVDAVKASAY DQGGSACNTW  660
VPTAIPTLAP RSTSMSLCHA APPFSLLHE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G052000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM7758560.0HM775856.1 Glycine max babyboom 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139701.10.0hypothetical protein PHAVU_008G052000g
SwissprotQ8LSN21e-149BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLV7B2C90.0V7B2C9_PHAVU; Uncharacterized protein
STRINGXP_007139701.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-139AP2 family protein