PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G058000.2
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 146aa    MW: 16469.6 Da    PI: 9.5365
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G058000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY376.6e-12100121122
                         ---SS-EEEEEEE--TT-SS-E CS
                WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                         ldDgy+WrKYGqK vk+s++pr
  Phvul.008G058000.2 100 LDDGYRWRKYGQKAVKNSTYPR 121
                         59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-1287122IPR003657WRKY domain
SuperFamilySSF1182906.02E-1093124IPR003657WRKY domain
PROSITE profilePS5081113.03595145IPR003657WRKY domain
SMARTSM007742.3E-5100143IPR003657WRKY domain
PfamPF031063.3E-8101124IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MEGHDPPPQS NPFLFTPNPL EPPEQGLRDS EWGNLFSAQN SFLLESVECG ASSSSPFMAQ  60
NKVVCEEEKG NQEKRKGGRV KKATRVPRFA FQTRSADDIL DDGYRWRKYG QKAVKNSTYP  120
RFTFTSPLKN VITLIIFNNG EKMKH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G058000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150375e-77AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139777.17e-86hypothetical protein PHAVU_008G0580000g, partial
RefseqXP_007139778.17e-86hypothetical protein PHAVU_008G0580000g, partial
TrEMBLV7B5N22e-84V7B5N2_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007139777.13e-85(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.11e-17WRKY DNA-binding protein 24