PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G058300.1
Common NamePHAVU_008G058300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 347aa    MW: 37750.6 Da    PI: 5.9343
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G058300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.4e-31158216259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp+++++tY+ eHnh+
  Phvul.008G058300.1 158 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPTMFIVTYTAEHNHP 216
                         79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081134.544152218IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-30154218IPR003657WRKY domain
SuperFamilySSF1182905.75E-26155218IPR003657WRKY domain
SMARTSM007741.4E-36157217IPR003657WRKY domain
PfamPF031061.0E-25159216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAEDWDLHAV VRGCSTITSS SVSSSSSSSS GFASCYFHPE GVSSSSSSSS GFSIFRGEQG  60
SQLLSLSAYP FEVRSPIEEL HELCRPFFSK AQPLSLQASS PLSSLSSYSS APPKTLSPQE  120
KQQQQRNKQP HSVTTPRSKR RKNQLKKVCQ VPFENLSSDI WAWRKYGQKP IKGSPYPRGY  180
YRCSSSKGCL ARKQVERNRS DPTMFIVTYT AEHNHPAPTH RNSLAGSTRQ KPLAPQTATT  240
EQDSDKSKSL TKPSSPATSG TEEEVPAQGE KSESREEKDD VMDDEEEDEF VLSDMVLTDD  300
FFESLDELSQ LTAPSVVTGD CFSDPFSAIA IPSWVASGAA TAGGCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-22144219480Disease resistance protein RRS1
5w3x_D4e-22144219480Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G058300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932950.0BT093295.1 Soybean clone JCVI-FLGm-17I1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139781.10.0hypothetical protein PHAVU_008G058300g
TrEMBLV7B2J10.0V7B2J1_PHAVU; Uncharacterized protein
STRINGXP_007139781.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-69WRKY family protein