PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G077000.1
Common NamePHAVU_008G077000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 828aa    MW: 90001.1 Da    PI: 6.5594
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G077000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4071.9e-1244598142374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lLl+cAeavs+++le a+++L ++s+l++p g++ qR+aayf eA++arl++s+ ++y++lp +++s     ++++a+++f+ +sP++k
  Phvul.008G077000.1 459 LTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQS----HKVASAFQVFNGISPFVK 545
                         579*********************************************************999988885....89999************* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         fsh+taNqaI ea+e+eervHiiD+di+qGlQWp L+  LasRp+g+p +R+Tg+g     s e+le+tg+rL++fA++l +pfef + va
  Phvul.008G077000.1 546 FSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFYILASRPGGAPYVRLTGLGT----SMEALEATGKRLSDFANKLCLPFEFFP-VA 631
                         *********************************************************....***************************.7* PP

                GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +++ +l++e+L+v++ Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++ n++sFl rf+ea++yysalfdsl ++
  Phvul.008G077000.1 632 EKVGNLDPERLNVSKTEAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLS-NTGSFLGRFVEAIHYYSALFDSLGSS 715
                         ************************9..999999999999....*******************97.699*********************** PP

                GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                         +++eseer++vE++ll+rei+nv+a  g +r+ + + +++Wre+++++GF+ ++l  +aa+qa+lll +++s+gy++ e++g l lgWkd 
  Phvul.008G077000.1 716 YGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPK-FHNWREKFQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDL 805
                         ******************************998887.****************************************************** PP

                GRAS 366 pLvsvSaWr 374
                          L+++SaWr
  Phvul.008G077000.1 806 CLLTASAWR 814
                         ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.329432794IPR005202Transcription factor GRAS
PfamPF035146.4E-122459814IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MAACALFSGG TNITEDGNVN NGSGSATSPL TSASNSSNMS NEEQQNLHGN MPQPHCDRKM  60
VRKRMASEMD QVNVHVTPPH NASSTTDYPR FPRRSTANMN MSSLEKGSTT TATLAAGTCS  120
NSNNNNNNNN NNNNYHFNNS NHNSNSGSIS SRDNVAIPNY PTVTVTTNYS TMLLPSSTTI  180
NSSGVAPNYS AHQHHHFQGL VESQSQDQQN PVPAVCGFSG LPLFPSQSQR NRDNNTATTN  240
VRSSGGNIVD VVASSSPSMD DTSAATSGWI DGILKDLIHS SNSVSIPQLI SNVREIIYPC  300
NPNLATILEY RLRLLTESTP QNKRGTEGVP LPPSVSSVKL MNNRVDGIVP NLHFTDASGA  360
AVVVNQHMLS NWGVPPITHH HDNNGNNNTN TNSNPSVSLV TLPSPPPPPH YSPPQEKQPH  420
PQEEDLAATN SAAEVALTRK KKEELREQKK KDEEGLHLLT LLLQCAEAVS AENLEDANKM  480
LLEISQLSTP FGTSAQRVAA YFSEAISARL VSSCLGIYAT LPHTHQSHKV ASAFQVFNGI  540
SPFVKFSHFT ANQAIQEAFE REERVHIIDL DIMQGLQWPG LFYILASRPG GAPYVRLTGL  600
GTSMEALEAT GKRLSDFANK LCLPFEFFPV AEKVGNLDPE RLNVSKTEAV AVHWLQHSLY  660
DVTGSDTNTL WLLQRLAPKV VTVVEQDLSN TGSFLGRFVE AIHYYSALFD SLGSSYGEES  720
EERHVVEQQL LSREIRNVLA VGGPSRTGEP KFHNWREKFQ QCGFRGISLA GNAATQASLL  780
LGMFPSEGYT LVEDNGILKL GWKDLCLLTA SAWRPPFHGG TAITHHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04418153380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G077000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140014.10.0hypothetical protein PHAVU_008G077000g
SwissprotQ9AVK40.0SCR_PEA; Protein SCARECROW
TrEMBLV7B5590.0V7B559_PHAVU; Uncharacterized protein
STRINGXP_007140014.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein