PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.008G085800.1

Common Name

PHAVU_008G085800g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

MYB_related

Protein Properties

Length: 175aa MW: 19465.9 Da PI: 9.1725

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G085800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.8	6.7e-10	96	141	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rWT+ E+ l++ + ++ +g+Wk I+++ +t q+ s+ qky+ Phvul.008G085800.1 96 RWTENEHRLFLIGLQKCSPGDWKNISKCYIPSKTSTQIASHAQKYM 141 9************************9988***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.204	89	145	IPR017930	Myb domain
SuperFamily	SSF46689	2.18E-14	91	145	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-13	92	144	IPR006447	Myb domain, plants
CDD	cd00167	3.31E-7	96	141	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.7E-8	96	140	IPR009057	Homeodomain-like
Pfam	PF00249	3.5E-7	96	140	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
VCVGASTVSI SNVSPHEYTS FKDNGESAYE FSTLTTQPIS PNVFCYNHAP TPSMVHAISP 60 NPIISEHVPS GWVQIPNDSN HSTPPVSKSH HKRYERWTEN EHRLFLIGLQ KCSPGDWKNI 120 SKCYIPSKTS TQIASHAQKY MLHQNGLKKN KKRKSIHDVT LDNINTGVVP SFIN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G085800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007140122.1	1e-127	hypothetical protein PHAVU_008G085800g, partial
TrEMBL	V7B6L3	1e-126	V7B6L3_PHAVU; Uncharacterized protein (Fragment)
STRING	XP_007140122.1	1e-126	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18526	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	4e-26	MYB family protein

Link Out ? help Back to Top
Phytozome	Phvul.008G085800.1
Entrez Gene	18622257