PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.008G095100.1

Common Name

PHAVU_008G095100g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bHLH

Protein Properties

Length: 167aa MW: 18510.1 Da PI: 8.2414

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G095100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.7e-09	44	84	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++++P K++ +++Le A++Y+k L Phvul.008G095100.1 44 ARERRHRISDRFKILQSMVPGG-----SKMDTVSMLEGAIHYVKFL 84 699***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.786	35	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.54E-14	40	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.56E-13	41	88	No hit	No description
SMART	SM00353	7.1E-12	41	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-11	41	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-7	44	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MECISPTSCE GSSSKNKISK EKKGVKKGNK GGVKLSTDPQ SVAARERRHR ISDRFKILQS 60 MVPGGSKMDT VSMLEGAIHY VKFLKSQIWL HQALINFLDI DHHEAPVHLP AEYNLPHEHS 120 ISLQQNPSSV SVHSQLSLPQ PPLAQCCFQG EEDCNTFDAT MKYWPA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G095100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007140229.1	1e-122	hypothetical protein PHAVU_008G095100g
Swissprot	Q9M041	7e-30	BH140_ARATH; Transcription factor bHLH140
TrEMBL	V7B5U7	1e-121	V7B5U7_PHAVU; Uncharacterized protein
STRING	XP_007140229.1	1e-122	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7167	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	3e-31	APRATAXIN-like

Link Out ? help Back to Top
Phytozome	Phvul.008G095100.1
Entrez Gene	18622352

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]