PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.008G098800.1

Common Name

PHAVU_008G098800g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

WOX

Protein Properties

Length: 236aa MW: 27053.8 Da PI: 9.5594

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G098800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.6	1.6e-21	87	146	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ +r+p+a+++e+++ +l +++ ++V++WFqN++a+e++ Phvul.008G098800.1 87 TRWNPTQEQIGILEMLYKGgTRTPNAQQIEQITVQLgkygKIEGKNVFYWFQNHKARERQ 146 7***************99************************************97 PP
2	Wus_type_Homeobox	115.6	2.4e-37	87	148	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+lyk G+rtPn+++i++it +L +yGkie+kNVfyWFQN+kaRerqkq Phvul.008G098800.1 87 TRWNPTQEQIGILEMLYKGGTRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQ 148 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	4.2E-7	84	151	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-13	85	154	IPR009057	Homeodomain-like
CDD	cd00086	2.13E-5	87	148	No hit	No description
Pfam	PF00046	3.5E-19	87	146	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.4E-8	88	146	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.106	92	147	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MTTSMKVHHF TRAFWEHEPF LTLGCNRLRP LAPKLPSLHT TTTPSLPFDL KSFIRPESGP 60 RKLVSLIHNN KDPPSPQAQV ETLPGGTRWN PTQEQIGILE MLYKGGTRTP NAQQIEQITV 120 QLGKYGKIEG KNVFYWFQNH KARERQKQKR NSLAFSHSPR TPTIHTVVTL ETARGEVVDR 180 DEEEGSPCKK KCRRWVFDCL EEQSMSSSSL CEEEEHRTLE LFPLQPEGRL RGLRN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G098800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096528	0.0	BT096528.1 Soybean clone JCVI-FLGm-15J7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007140278.1	1e-175	hypothetical protein PHAVU_008G098800g
Swissprot	Q6X7J9	8e-67	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	V7B305	1e-174	V7B305_PHAVU; Uncharacterized protein
STRING	XP_007140278.1	1e-175	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6132	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	6e-63	WUSCHEL related homeobox 4

Link Out ? help Back to Top
Phytozome	Phvul.008G098800.1
Entrez Gene	18622395

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]