PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G099400.1
Common NamePHAVU_008G099400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Dof
Protein Properties Length: 362aa    MW: 37644.6 Da    PI: 8.9855
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G099400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.72.6e-3881139361
              zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                         e+ +kcprC+s+ntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+nk+s
  Phvul.008G099400.1  81 EAPQKCPRCESANTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRS 139
                         56789***************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-2864129IPR003851Zinc finger, Dof-type
PfamPF027012.7E-3283138IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.23684138IPR003851Zinc finger, Dof-type
PROSITE patternPS01361086122IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MVYTSIPAYI DPANWQQQQP NHQQQGNNTA VSSHLILPPP IQPPPPPPSQ PHGLGGSATA  60
GSIRPGSMAD RARMANIPMQ EAPQKCPRCE SANTKFCYFN NYSLSQPRHF CKACRRYWTR  120
GGALRNVPVG GGCRRNKRSR GSSGNSARSP ANSDRQTASA GSASTTSGSS SADMVAGLGG  180
TGVPSSLRFM APLHHLGDHH LGVGGGGEIG LNYGLNYGGI SGPMGGIGDL NFHIGSALNG  240
GGGSVLSGLD QWRMPQTHQF PFLSGLEASS SHGLYPFDGA SGSDGYGGTP IKVSTSGMMS  300
QFASVKMEDN HPELGLPRQF LGVNNNPNTN EQYWNGGGGG ATSAWTDLSV FSSSSTTSNP  360
L*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00295DAPTransfer from AT2G37590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G099400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140287.10.0hypothetical protein PHAVU_008G099400g
TrEMBLV7B7330.0V7B733_PHAVU; Uncharacterized protein
STRINGXP_007140287.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.17e-36Dof family protein