PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G103000.1
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 605aa    MW: 67803.4 Da    PI: 9.7453
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G103000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.4e-08512561147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E e lv+av++lG+g+W+ + ++     k+Rt  ++k++w ++
  Phvul.008G103000.1 512 RRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFdhaKHRTYVDLKDKWKTL 561
                         567888999**********************99**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.8E-7318411IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.674507566IPR017930Myb domain
SMARTSM007171.6E-7511564IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-10512562IPR009057Homeodomain-like
CDDcd116601.15E-16513563No hitNo description
SuperFamilySSF466891.11E-15513594IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MMLQKKVNYG FNGYKGPAIP KASRSIRGRG TIRKKPENNQ IQAFEILANV AGNFLQESEN  60
SGLDNVAPTK DPQTFSSANI KDKLEDEGGS FKKDLFEHGN CSEIVSACVP SRQGKHENLR  120
VMDNSSFPGN HLEGQGQNIL EREDERVKRR RVNEKNTHNK GCFDGLIEPS YKVSKDCSSE  180
NNVAKSSLEG HRHLDSFPNT SSGRKLVRDD DENLVNCTQL NSRYKISTTP PDMPKLKYAS  240
PLMSDENNSR DNSELENLQR MYPFKKRKFF NQTSSSTSDR GSQCQGMFDS SDTTRVNDTN  300
HAIEESSSIV GQQVHSGSKG CNVKLSIKSF KVPELFINIP ETATIGSLKR TVMEAVTSIL  360
GDELHVGILL QGKKVRDDSK TLIQTGISQD DKRHRLGFML EPRHSSNSPS SCNDNPCFLK  420
TGSQQKLSKQ STSLLLQQGT VNVSQERSMI KVERCVEGDL NVVSSPTDTY ANNNMSKCRT  480
LVAVPAINME ALAVVPFRRK SGNPDFAQRR IRRPFSVLEV EALVQAVEKL GTGRWRDVKQ  540
RAFDHAKHRT YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLAAHA YWSQQQCKHQ  600
LKPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-524966041109Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147151KRRRV
2258267QRMYPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G103000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-152AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027927480.10.0telomere repeat-binding protein 5-like
TrEMBLA0A4D6NGN90.0A0A4D6NGN9_VIGUN; Uncharacterized protein
STRINGXP_007140327.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.13e-91TRF-like 2