PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.008G103100.1

Common Name

PHAVU_008G103100g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

G2-like

Protein Properties

Length: 239aa MW: 26715.2 Da PI: 10.2542

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G103100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.6	1.2e-27	13	70	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkv...kgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rFv av++LGG+++AtPk il+ mk L ++hvkSHLQkYR+ Phvul.008G103100.1 13 KERLRWTQELHDRFVVAVNRLGGPDRATPKGILKGMKAlgnSQLNIYHVKSHLQKYRI 70 68****************************99987622266************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-25	11	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-14	12	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-20	13	71	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-6	15	69	IPR001005	SANT/Myb domain
Pfam	PF14379	3.7E-11	102	140	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MGSSRSRGSA TAKERLRWTQ ELHDRFVVAV NRLGGPDRAT PKGILKGMKA LGNSQLNIYH 60 VKSHLQKYRI SKLIPESPTR GKLEKRSISD ILPNFSSISA HQLKELLQIQ TEMQNRLSDK 120 TEVQRSLKVK IEAQGRFLER FGQSSHSKTI IGKACKSFAS STTAPLPSLS EESESLESQT 180 EKEHESVKKQ RISEEGVFPT SFEHASSTPP EFYNQTWNVP WSQLAAACQS TLDPSFLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	12	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	12	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-19	13	72	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	13	72	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	13	72	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	13	72	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	12	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	12	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	12	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	12	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	12	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	12	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G103100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007140328.1	1e-175	hypothetical protein PHAVU_008G103100g
Swissprot	Q9SJW0	3e-41	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	V7B354	1e-174	V7B354_PHAVU; Uncharacterized protein
STRING	XP_007140328.1	1e-175	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10659	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	3e-43	G2-like family protein

Link Out ? help Back to Top
Phytozome	Phvul.008G103100.1
Entrez Gene	18622442