PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G114300.1
Common NamePHAVU_008G114300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 584aa    MW: 64784.7 Da    PI: 7.4335
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G114300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-093774141954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  Phvul.008G114300.1 377 FEHflHPYPTDTDKIMLAKQTGLSRNQVSNWFINARVR 414
                         554459******************************88 PP
2BELL95.83.9e-31247316372
                BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +e +kkk +Ll++l+eV++rY++y++q+++vi sFe v glg+a+p++slA +a+S+hF+ Lk ai++q+
  Phvul.008G114300.1 247 NESRKKKCRLLTMLDEVYRRYRHYYQQMHAVITSFEYVSGLGNAAPFASLAINAMSKHFKGLKSAITDQL 316
                         58899**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-40179314IPR006563POX domain
PfamPF075261.3E-34184313IPR006563POX domain
PROSITE profilePS5007112.131355418IPR001356Homeobox domain
SMARTSM003891.4E-10358422IPR001356Homeobox domain
CDDcd000869.32E-13358419No hitNo description
SuperFamilySSF466893.64E-17360425IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-28361422IPR009057Homeodomain-like
PfamPF059206.2E-19375414IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MAEGFEHYHV PQQSRRDKLR VFAQNQPSFV ESSSILHPTC PPLTSLYDPS LIPSDLLACA  60
TQQGAAAKGE GSNLMMGFVE GGVVNGDAIH VINSNSNHHN NNPFLYQIQN LREFGDGYND  120
ASEMMVFKPE PLSLSLSSQT NNTHHPLELN LQRFGAVIPG LVGRNSEVSR NSVPLGPFTG  180
YASILKGSRF LKPAQQLLEE LCDGGVRGIY ATEKSLAPDA SLMEPPHEGL SASGVVGGDD  240
PLGEYENESR KKKCRLLTML DEVYRRYRHY YQQMHAVITS FEYVSGLGNA APFASLAINA  300
MSKHFKGLKS AITDQLQFIN KAPFQISNRK DESPRLHSSD RGTYSQRPGF LEHQQPVWRP  360
QRGLPERAVS VLRAWLFEHF LHPYPTDTDK IMLAKQTGLS RNQVSNWFIN ARVRLWKPMV  420
EEIHMLESQQ AQKRPQREEQ NRRNLSVDHL PSDNSLVTEN PSSSMEKFQD TLYKQHRNEI  480
ANMQVRGQEQ LNQTNTRNQQ VGVGVSMGSG GGGASSNNGV SLTLGLHQNH GIGLSEPFGM  540
SAAQRFGVTL QPEGYVISGF ESQNRHFGRD VIGGGQLLHD FVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15364422563Homeobox protein Meis2
3k2a_B1e-15364422563Homeobox protein Meis2
4xrs_A1e-15364421158Homeobox protein Meis1
4xrs_B1e-15364421158Homeobox protein Meis1
5bng_A1e-15364422159Homeobox protein Meis2
5bng_B1e-15364422159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G114300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140461.10.0hypothetical protein PHAVU_008G114300g
TrEMBLV7B4E50.0V7B4E5_PHAVU; Uncharacterized protein
STRINGXP_007140461.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-103TALE family protein