PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G117300.1
Common NamePHAVU_008G117300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 303aa    MW: 34130 Da    PI: 7.2095
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G117300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000125678123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H+++H
  Phvul.008G117300.1 56 YSCTFCTREFRSAQALGGHMNVH 78
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.17E-65382No hitNo description
SMARTSM003550.00975678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1365683IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEEGQCLIRS KRKYSMSLSL DDSSTNYPSN EDHSWEEQAF AKDAAWSGCV WPPRSYSCTF  60
CTREFRSAQA LGGHMNVHRR DRARLKQPYS PQNEILNDDL EKTQTQNSVQ ISFTSLGYLY  120
PPSLSGLAHN TNPNSDPYSH VVASPSNVLG TSLNKRCREK PQIPLYNNSS IFKGCHESSP  180
SFSSKSLSNL TDDFRFCSSR LDLEASFEKK LQGLDSGCRK GKTEVAVSMN MFMSRAHPVV  240
QFENKEIDTS FKNRKSDASS IPLFPKSCSV DKHHVQSEMF DFSPSSIEEL DLELRLGYRS  300
EV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-125178229superman protein
2l1o_A4e-125178229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G117300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140494.10.0hypothetical protein PHAVU_008G117300g
TrEMBLV7B6L10.0V7B6L1_PHAVU; Uncharacterized protein
STRINGXP_007140494.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-26zinc-finger protein 10