PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G119400.1
Common NamePHAVU_008G119400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 312aa    MW: 34500.5 Da    PI: 6.5092
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G119400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.54.8e-32125181258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                         dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers edp++++itYeg H h
  Phvul.008G119400.1 125 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSIEDPDTLIITYEGLHLH 181
                         8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.934119184IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-29122181IPR003657WRKY domain
SuperFamilySSF1182901.57E-26122181IPR003657WRKY domain
SMARTSM007749.6E-35124183IPR003657WRKY domain
PfamPF031061.4E-25125181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MIESAMSKTM MEEVMATWSE GSEDDDLVKE LLDDGSPLLV LPQEAIQPPI TNASSSDHAF  60
NRFLSNIYSG PTISDIENAL SLNNQRDHFP PLSSPSRVSI LEKGLSKIEN KYTLKIKCFG  120
NGMGDDGYKW RKYGQKSIKN SPNPRSYYRC TNPRCSAKKQ VERSIEDPDT LIITYEGLHL  180
HFAYPYFLMG QPHQSQSHPP IKKSKPTSSQ GPAQAHRSDY VREAQETQTN ATSGVVPSTS  240
LDSPQDMAQP NMGSQGLLED MVPFMIRNPT NDVNSAHTKF SCSTFRSPPT SPLWGSNYST  300
SCYTVGLNSS T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-201251811571WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G119400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-150AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140517.10.0hypothetical protein PHAVU_008G119400g
TrEMBLV7B7R40.0V7B7R4_PHAVU; Uncharacterized protein
STRINGXP_007140517.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-54WRKY DNA-binding protein 49