PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.008G138000.1

Common Name

PHAVU_008G138000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

FAR1

Protein Properties

Length: 220aa MW: 24915.5 Da PI: 8.2684

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G138000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.4	8.9e-27	48	137	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k + e+++r++ r gCka++ vk+ek+gkw+vt++ ++HnH+l Phvul.008G138000.1 48 KFYIDYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNNKGALGPEKKPRPSAREGCKATILVKLEKSGKWVVTRFIKDHNHPLI 137 6***************************************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.5E-25	48	137	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MDFVVVDSDK ANEAECSCLE ESTSIYEGVE IQEPYVGMEF DSEVAARKFY IDYARRVGFV 60 VRIMQRRRSG IDGRTLARRL GCNKQGFSPN NKGALGPEKK PRPSAREGCK ATILVKLEKS 120 GKWVVTRFIK DHNHPLIATA NGFGTVGDKD KKISELTMEL ERQDQLCAAY REKLLSFINN 180 VEEETEELST KIQLVIENVR RAESEMKKCS QNRKPWCLT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G138000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007140743.1	1e-163	hypothetical protein PHAVU_008G138000g
TrEMBL	V7B4B6	1e-161	V7B4B6_PHAVU; Uncharacterized protein
STRING	XP_007140743.1	1e-162	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	2e-75	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Phvul.008G138000.1
Entrez Gene	18622810