PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G140200.1
Common NamePHAVU_008G140200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 110aa    MW: 12728.8 Da    PI: 9.7809
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G140200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.24e-1034903393
                        -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                        ++ +tl     rsW+vkli+ ++  +y +t +  +F+++n+LkegD + F+l++  +  +v
  Phvul.008G140200.1 34 EQYITLLV-GDRSWRVKLIHYRNNTAY-FT-NFLDFARENDLKEGDACFFQLINM-GDDMV 90
                        33444443.56*******987776665.66.8*******************9863.33333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-13591IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-12693IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-10897No hitNo description
SMARTSM010198.8E-4999IPR003340B3 DNA binding domain
PfamPF023622.7E-82891IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MEAVGNTSFM VILKPSNLIT GYMVPVRSYI KRREQYITLL VGDRSWRVKL IHYRNNTAYF  60
TNFLDFAREN DLKEGDACFF QLINMGDDMV FRATFCKQTL LSSRVLKGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G140200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140767.11e-77hypothetical protein PHAVU_008G140200g
TrEMBLV7B8G03e-76V7B8G0_PHAVU; Uncharacterized protein
STRINGXP_007140767.16e-77(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.19e-09related to vernalization1 1