PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G143400.1
Common NamePHAVU_008G143400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 743aa    MW: 81475.4 Da    PI: 6.0595
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G143400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS318.81.1e-973867412374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         +e+L++ Ae +++g+lela+ +Larl+++ sp g+p+qR+a+yf+eAL+  l++  +   ++++ s+t       ++ a+k fse+sP+l+
  Phvul.008G143400.1 386 TEQLFKTAELIDAGNLELAHGILARLNHQLSPFGKPFQRAAFYFKEALQLGLHS--NANNSSMTFSPT---GLLLKIGAYKSFSEISPVLQ 471
                         689***************************************************..333333444444...4999**************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         f+++t+Nqa+leaveg +r+HiiDfdi+ G+QW +++q+La R++g+p+lRiT++ sp+++++ el+ t+e+L+++A e++++fe ++l  
  Phvul.008G143400.1 472 FANFTCNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPELRITAFLSPSHHDEIELSFTQENLKQYAGEINMSFELEILSF 562
                         ****************************************************************************************966 PP

                GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.ea 273
                         ++l++   +   ++  Ea++Vn+ +  ++ +      +s+ +  L++vk+l Pkvvv  ++ +d+++++F ++++ al+ ys l++sl ++
  Phvul.008G143400.1 563 ESLNSA-SWPQPLRDCEAVVVNMPIGSFSSY------PSYLPLALRFVKQLMPKVVVTLDRSCDRTDAPFPQHLIFALQSYSGLLESLdAV 646
                         666666.44446799**********988887......777788*********************************************555 PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                         ++  + +  +++E+ +l+++ +++v  ++      +e+  +W++ l+++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W++
  Phvul.008G143400.1 647 NV--HPDVLQMIEKYYLQPAMEKLVLGRHGF----QERILSWKNLLMSSGFSPLAFSNFTESQAECLVQRTPGKGFHVEKRQSSLVLCWQR 731
                         54..5578899**************987776....79999*************************************************** PP

                GRAS 365 rpLvsvSaWr 374
                         + L+svS Wr
  Phvul.008G143400.1 732 KDLISVSTWR 741
                         *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.858359721IPR005202Transcription factor GRAS
PfamPF035143.9E-95386741IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MKAVPLPFQE FRGNGVLDFA SGGVAVSDSL LLPQQEQFLQ RWNPHRENYC YVGIDPTSGL  60
DLKRKTSPPT SSSTLSSSRA SSGCGGGCGS TDSTTGAGAA KVSTEKENNP PQAGLEVGQG  120
RCGLGMEDWE SVLSESSGQD NSILKLIMGD IEDPSVGLTK LLQGGSASQD VEFNGVGVGF  180
SLLDQSSVLD PIPSVNFMTT IHPSAPGNCS DFPFNSHTNV SSNISRVASG VNLPNPAFPD  240
SARNLSPVSL PQGVLHPHQQ HNPPIEPLDE KLQVLNPQFF LNQNQTQFMA NPGSVLPLTY  300
AQLQEHHQLL PQPPAKRLNC GPNYQVPKAP FLDSGQELLL RRQQQQLQLL PHHLLQRPSM  360
VVAPKQKMAS PSGEDLATHQ LQQAITEQLF KTAELIDAGN LELAHGILAR LNHQLSPFGK  420
PFQRAAFYFK EALQLGLHSN ANNSSMTFSP TGLLLKIGAY KSFSEISPVL QFANFTCNQA  480
LLEAVEGFDR IHIIDFDIGF GGQWSSFMQE LALRNGGAPE LRITAFLSPS HHDEIELSFT  540
QENLKQYAGE INMSFELEIL SFESLNSASW PQPLRDCEAV VVNMPIGSFS SYPSYLPLAL  600
RFVKQLMPKV VVTLDRSCDR TDAPFPQHLI FALQSYSGLL ESLDAVNVHP DVLQMIEKYY  660
LQPAMEKLVL GRHGFQERIL SWKNLLMSSG FSPLAFSNFT ESQAECLVQR TPGKGFHVEK  720
RQSSLVLCWQ RKDLISVSTW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-3139174025378Protein SCARECROW
5b3h_A3e-3139174024377Protein SCARECROW
5b3h_D3e-3139174024377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G143400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140802.10.0hypothetical protein PHAVU_008G143400g
RefseqXP_007140803.10.0hypothetical protein PHAVU_008G143400g
TrEMBLV7B4H10.0V7B4H1_PHAVU; Uncharacterized protein
STRINGXP_007140802.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-125GRAS family protein