PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G155700.1
Common NamePHAVU_008G155700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 201aa    MW: 23157.9 Da    PI: 6.9107
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G155700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-171663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd++l++++  +G g W++ a+  g++Rt+k+c++rw++yl
  Phvul.008G155700.1 16 KGPWTMEEDLILINYISNHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 63
                        79********************************************97 PP
2Myb_DNA-binding51.52.3e-1669112146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T+eE++l+ ++++++G++ W++Ia+ ++ gRt++++k++w++
  Phvul.008G155700.1  69 RGNITAEEQLLIMELHAKWGNR-WSKIAKQLP-GRTDNEIKNFWRT 112
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-24966IPR009057Homeodomain-like
PROSITE profilePS5129417.11163IPR017930Myb domain
SuperFamilySSF466897.49E-3013110IPR009057Homeodomain-like
SMARTSM007171.2E-121565IPR001005SANT/Myb domain
PfamPF002494.5E-161663IPR001005SANT/Myb domain
CDDcd001677.01E-101863No hitNo description
PROSITE profilePS5129424.36264118IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-2467118IPR009057Homeodomain-like
SMARTSM007174.4E-1468116IPR001005SANT/Myb domain
PfamPF002494.1E-1569112IPR001005SANT/Myb domain
CDDcd001674.58E-1173112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDKKQCNTSQ DPEVRKGPWT MEEDLILINY ISNHGEGVWN SLAKAAGLKR TGKSCRLRWL  60
NYLRPDVRRG NITAEEQLLI MELHAKWGNR WSKIAKQLPG RTDNEIKNFW RTRIQKHIKQ  120
ADQQQSNSNS EINDHQASTS QVSTMAEPME TYSSPCYQGM LEPFSTQLPN IPDQSSCCTN  180
DNNNYWSMED FWSMQLLNGD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-271111822128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G155700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0901840.0BT090184.1 Soybean clone JCVI-FLGm-3H24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140962.11e-150hypothetical protein PHAVU_008G155700g
SwissprotP813912e-93MYB05_ANTMA; Myb-related protein 305
TrEMBLV7B9041e-149V7B904_PHAVU; Uncharacterized protein
STRINGXP_007140962.11e-149(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.13e-87myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]