PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G155900.1
Common NamePHAVU_008G155900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 200aa    MW: 23114 Da    PI: 7.5379
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G155900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.91.9e-171663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  Phvul.008G155900.1 16 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 63
                        79********************************************97 PP
2Myb_DNA-binding52.61e-1669112146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T+eE++l+ ++++++G++ W++Ia+ ++ gRt++++k++w++
  Phvul.008G155900.1  69 RGNITPEEQLLIMELHAKWGNR-WSKIAKQLP-GRTDNEIKNFWRT 112
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-24966IPR009057Homeodomain-like
PROSITE profilePS5129417.2741163IPR017930Myb domain
SuperFamilySSF466893.74E-3013110IPR009057Homeodomain-like
SMARTSM007177.2E-131565IPR001005SANT/Myb domain
PfamPF002492.4E-161663IPR001005SANT/Myb domain
CDDcd001673.07E-101863No hitNo description
PROSITE profilePS5129424.33164118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2467119IPR009057Homeodomain-like
SMARTSM007172.1E-1468116IPR001005SANT/Myb domain
PfamPF002491.3E-1569112IPR001005SANT/Myb domain
CDDcd001671.98E-1173112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDKKLSTMSH DPEVRKGPWT MEEDLILINY IANHGEGVWN SLAKAAGLKR TGKSCRLRWL  60
NYLRPDVRRG NITPEEQLLI MELHAKWGNR WSKIAKQLPG RTDNEIKNFW RTRIQKHMKQ  120
TESFQQQSNS ETNDHQACTS QVSTIAEPME TYSPSCYQGM LEPFSAQFHT NPDHSSCCTN  180
DNTNYWSMED ILSMQLANY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-271111822128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G155900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904801e-180BT090480.1 Soybean clone JCVI-FLGm-4H21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140964.11e-151hypothetical protein PHAVU_008G155900g
SwissprotP813911e-85MYB05_ANTMA; Myb-related protein 305
TrEMBLV7B7W91e-150V7B7W9_PHAVU; Uncharacterized protein
STRINGXP_007140964.11e-150(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.13e-85myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]