PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G157600.1
Common NamePHAVU_008G157600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 349aa    MW: 38599.8 Da    PI: 6.9165
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G157600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.8e-18238272135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Phvul.008G157600.1 238 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 272
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169928.1E-8110329IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.149232268IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-17232282IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-16233296No hitNo description
Gene3DG3DSA:3.30.50.101.9E-14234269IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.83E-14237284No hitNo description
PfamPF003201.3E-15238272IPR000679Zinc finger, GATA-type
PROSITE patternPS003440238263IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MESPNSSPIF PQFTLDTSKN NNPDHFIVED LLDFSNDDAV IADSIFDSLP VNSTDSSNVT  60
AVDSCNSSSF SGYDPHTIPD IGSRNLSDGH FSGDLSVPYD DIAELEWLSN FVEESFSSED  120
LQKMQLISGM NARNDHVSKA RGFHSEPTRS GFHSEPTRNN PIFNSEVSVP AKARSKRSRG  180
PPCNWASRLL VLSPTTSSSS DSEIVVPVPT PPCTKKPAKA TPRKKDSGDG SGGDGRRCLH  240
CATDKTPQWR TGPMGPKTLC NACGVRYKSG RLVPEYRPAA SPTFVLTKHS NSHRKVLELR  300
RQKEMVRAQQ HQQQQFLQHH HQNMLLDVSN SEDYLVHQHM GPDFRQLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G157600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140987.10.0hypothetical protein PHAVU_008G157600g
SwissprotO826328e-94GATA9_ARATH; GATA transcription factor 9
TrEMBLV7B9300.0V7B930_PHAVU; GATA transcription factor
STRINGXP_007140987.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-81GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]