PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G174200.1
Common NamePHAVU_008G174200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 233aa    MW: 26322.1 Da    PI: 10.1973
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G174200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.92e-0687106120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  nL+ H+
  Phvul.008G174200.1  87 FSCPVCLKTFNRYNNLQMHM 106
                         89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.71E-582109No hitNo description
PROSITE profilePS5015710.1887114IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-687106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MNQNQLQPLP LLSSFLGSSP QEALLQNQNP KAYHGQVEDV TVALHIGLPN NSGGSTNNQG  60
FVNATTHVPS NYWIPTQEQI LIGFSHFSCP VCLKTFNRYN NLQMHMWGHG SQYRRGPDSL  120
KRTHPRPLLD IPCYCCSRGC KNNIDHPRAK PLKDFRTLQT HFKRKHGAKP FTCRKCAKPL  180
AVKGDWRTHE KNCGKRWLCI CGSDFKHKRS LKDHIRAFGF GHTPFTSSSD AM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122DSLKRT
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G174200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141186.11e-175hypothetical protein PHAVU_008G174200g
SwissprotQ8VWG34e-97TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLV7B6K91e-174V7B6K9_PHAVU; Uncharacterized protein
STRINGXP_007141186.11e-175(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-97C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]