PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.008G179200.1

Common Name

PHAVU_008G179200g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

ZF-HD

Protein Properties

Length: 262aa MW: 28416.7 Da PI: 6.9249

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G179200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	97.7	8.7e-31	52	108	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY+eC+kNhA+s GghavDGC+Efmp+ ge+gt +a+ CaAC+CHRnFHR+e + e Phvul.008G179200.1 52 AVRYRECQKNHAVSFGGHAVDGCCEFMPA-GEDGTLEAVICAACNCHRNFHRKEIDGE 108 69************************9.999******************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-20	53	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.6E-28	53	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.4E-27	54	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.366	55	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	8.97E-21	185	257	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-31	186	257	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.7E-25	199	256	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MEFDDQEEQE EEMGMPEPPV PAPVASYDSL GNSAARSKVG GEGRKGAFGA GAVRYRECQK 60 NHAVSFGGHA VDGCCEFMPA GEDGTLEAVI CAACNCHRNF HRKEIDGEMT SFHHRAQPPP 120 PPLHHHHQFS PYYHHRVPQH PAAAGYLHHH LATPPMAQHR PLALPAAASG GGLSREDEDI 180 SNPSSSGGGG GGGGGGGSKK RFRTKFTQEQ KDKMLAFAEQ LGWRIQKHDE SAVEQFCAET 240 NVERKVLKVW MHNNKNTLVC L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-29	198	257	16	75	ZF-HD homeobox family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	197	SGGGGGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G179200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007141241.1	0.0	hypothetical protein PHAVU_008G179200g
Swissprot	Q9SB61	9e-73	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	V7B6P5	0.0	V7B6P5_PHAVU; Uncharacterized protein
STRING	XP_007141241.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-63	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Phvul.008G179200.1
Entrez Gene	18623240

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]