PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G185700.1
Common NamePHAVU_008G185700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 311aa    MW: 35099.3 Da    PI: 7.2132
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G185700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY811.2e-25129189259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dD y+WrKYGqKe+++sefprsY+rC+++   gC+++k+v+ ++++p++  itY g H+++
  Phvul.008G185700.1 129 DDNYAWRKYGQKEIQNSEFPRSYFRCSYKndqGCKATKQVQLDHDNPHMYRITYIGIHTCN 189
                         8***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-25118190IPR003657WRKY domain
SuperFamilySSF1182908.63E-25125190IPR003657WRKY domain
SMARTSM007741.1E-35128190IPR003657WRKY domain
PfamPF031066.4E-25129188IPR003657WRKY domain
PROSITE profilePS5081119.818129191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MKNMICTETD AKKKREIMKN IVKGKEAATE LKILLQKPSG SEPSLSYHQL MAIVLTSFTQ  60
SLSIISSEPS SADVVACLNS TQYGSPVTGS GIDPTSPHCS EKRSQKGGRG RYNRSKGVLR  120
KTIVSCTTDD NYAWRKYGQK EIQNSEFPRS YFRCSYKNDQ GCKATKQVQL DHDNPHMYRI  180
TYIGIHTCNV IPMVPHTTTD SSSWESYHLH SDRDSNAQDH LISSPHLAIK PEFSKEIHTP  240
SDLTDHNMFL EYWKESEASN STIMPLRKAP DNNADNVYSC TDSHNLDMDF GEVASVLLYP  300
HFHFDQDKFF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21122188268OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G185700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150362e-69AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141317.10.0hypothetical protein PHAVU_008G185700g
TrEMBLV7BA120.0V7BA12_PHAVU; Uncharacterized protein
STRINGXP_007141317.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-34WRKY DNA-binding protein 70