PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G185800.1
Common NamePHAVU_008G185800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 257aa    MW: 28711.2 Da    PI: 8.393
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G185800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.43.4e-24138198259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dD ++WrKYGqKe+ +s+fprsY+rC+++   gC+++k+v+r++e p++ ++tY+g H+++
  Phvul.008G185800.1 138 DDNHAWRKYGQKEIVNSQFPRSYFRCSHKydqGCQATKQVQRNQECPTMYQTTYTGIHTCS 198
                         8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-24129199IPR003657WRKY domain
SuperFamilySSF1182901.31E-22135198IPR003657WRKY domain
SMARTSM007747.4E-33137199IPR003657WRKY domain
PfamPF031067.8E-23138197IPR003657WRKY domain
PROSITE profilePS5081119.623138195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MKMNLCPETE SVSPQKKRAI MEELVKGQEA ATQLRVLLHN PFETDLSLSS HHLIAKVLTS  60
FTQALSVINS SPLLPGSADG LGYQNLLLSG ENGWSVPRSS NCPTSGDCSE KRSQKGGRGR  120
YSRRKSALTW TKLSCTTDDN HAWRKYGQKE IVNSQFPRSY FRCSHKYDQG CQATKQVQRN  180
QECPTMYQTT YTGIHTCSKA THSTTDSSNW ESYLLNSDHD SILQDPPISS PTLTIKQEFL  240
KDLTDHKPLE PSLLQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-21138197968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G185800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-109AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141318.10.0hypothetical protein PHAVU_008G185800g
TrEMBLV7B5X30.0V7B5X3_PHAVU; Uncharacterized protein
STRINGXP_007141318.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-30WRKY DNA-binding protein 70