PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G192200.1
Common NamePHAVU_008G192200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 97aa    MW: 11304.4 Da    PI: 6.9717
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G192200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.1e-081457344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +WT    +++  a +++  +   +W  Iar +g  ++++++k ++
  Phvul.008G192200.1 14 SWTRMQNKQFESALALYDQDtpdRWQNIARIVG-DKSAEEVKKHY 57
                        7*****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.528761IPR017877Myb-like domain
SMARTSM007177.2E-81163IPR001005SANT/Myb domain
CDDcd001673.84E-61461No hitNo description
Gene3DG3DSA:1.10.10.606.8E-61467IPR009057Homeodomain-like
PfamPF002491.5E-51457IPR001005SANT/Myb domain
SuperFamilySSF466899.37E-121467IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASSSHNNKE NSSSWTRMQN KQFESALALY DQDTPDRWQN IARIVGDKSA EEVKKHYEIL  60
LEDLRHIESG RVPIPTYKST HDRNNEERSL KYLNQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-28180176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G192200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150363e-83AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141400.11e-66hypothetical protein PHAVU_008G192200g
SwissprotQ1A1732e-30RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLV7B6F63e-65V7B6F6_PHAVU; Uncharacterized protein
STRINGXP_007141400.15e-66(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-31RAD-like 6