PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.008G204500.1

Common Name

PHAVU_008G204500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

NF-YC

Protein Properties

Length: 278aa MW: 31081.6 Da PI: 5.0604

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G204500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	60.3	4.1e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + +t++ ++++v+ ++fdfl div + Phvul.008G204500.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSK 86 5789**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.0E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	6.2E-20	4	88	IPR009072	Histone-fold
Pfam	PF00808	2.3E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLRRGAK 60 TMNAFHLKQC VQTFNVFDFL KDIVSKVPDL GGSVANGDDH TVKRRKVAED DNDSHEEPKR 120 SNRAEPGHTG GRGRGRGRGR GRGRGIRNVD QEMSSHAKCE EDSDALKQNE KQTQSNESME 180 HVSSPEEVKQ TLPVSKPAQV SIRNFDLNMD PDENMDLVAS PTPVPSSSSA KSISEEKHDE 240 YPGWSLSDME KMTIDPIQLA NINGRIDEDE EDYDEEL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	143	RGRGRGRGRGR
2	135	144	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G204500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007141534.1	0.0	hypothetical protein PHAVU_008G204500g
TrEMBL	V7B9I4	0.0	V7B9I4_PHAVU; Uncharacterized protein
STRING	XP_007141534.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	5e-62	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Phvul.008G204500.1
Entrez Gene	18623501