PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G214600.1
Common NamePHAVU_008G214600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 422aa    MW: 46229.8 Da    PI: 7.9299
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G214600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.4e-104873126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ++++ C +++rtG C yG++C+++H+
  Phvul.008G214600.1 48 PGEPDCLYYLRTGMCGYGSNCRYHHP 73
                        5789*********************8 PP
2zf-CCCH37.93.1e-1291116227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C +f++tGtCkyG++Ck++H++
  Phvul.008G214600.1  91 GQPDCEYFLKTGTCKYGSTCKYHHPK 116
                         5799********************96 PP
3zf-CCCH38.12.6e-12139161527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          C++++rtG Ck+G  CkF+H++
  Phvul.008G214600.1 139 SCPYYMRTGSCKFGVACKFHHPQ 161
                         6********************97 PP
4zf-CCCH40.16.2e-13274299227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++Cr+f+ tGtCkyG+ CkF+H++
  Phvul.008G214600.1 274 DQPECRYFMSTGTCKYGSDCKFHHPK 299
                         689*********************96 PP
5zf-CCCH322.1e-10317341226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C++++ +G Ck+G++CkF H+
  Phvul.008G214600.1 317 GQAVCSYYRIYGMCKFGPTCKFDHP 341
                         7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9864775IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-54774IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-74973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-65274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.78889117IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-789116IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-1091116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-693118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-595116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638134162IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4136161IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10138161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-5139162IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6272299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624272300IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-11274299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-7276301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-6278299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5313341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544315343IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6315342IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-7317341IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MPENRQVHRN ADSTPSGDNI EEAIRRLKIN DNWDRDAAAQ STQYPDRPGE PDCLYYLRTG  60
MCGYGSNCRY HHPAHISIGT HYGEELPQRT GQPDCEYFLK TGTCKYGSTC KYHHPKDRRG  120
AAPVSFNTLG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP QHASLGAYPL AGSPTSTTII  180
PTSGLPYAGG FPAWSAVPRM SYLSGQGVQS YVPPFLSSSQ SIIPMQSWNN YMGSMNPTMP  240
TGYLGSNLVY DFMNLGESLF GGQAINSALP NRPDQPECRY FMSTGTCKYG SDCKFHHPKE  300
RVSQSLINPL GLPVRPGQAV CSYYRIYGMC KFGPTCKFDH PVLTIPQNYG LTSPALSALD  360
APLISNQRGL SSVQSPETSP SKLSSDNKLQ HSDAKAGTED SSKQADTTPN SFPASSEPLH  420
D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G214600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976690.0BT097669.1 Soybean clone JCVI-FLGm-22K6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141660.10.0hypothetical protein PHAVU_008G214600g
TrEMBLV7B7760.0V7B776_PHAVU; Uncharacterized protein
STRINGXP_007141660.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-117C3H family protein