PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G222700.1
Common NamePHAVU_008G222700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 258aa    MW: 28404.7 Da    PI: 9.4622
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G222700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.1e-1469115354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  +v+++k+L
  Phvul.008G222700.1  69 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVVDHVKDL 115
                         79*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.41566115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1569118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1169115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.13E-1169118No hitNo description
SuperFamilySSF474596.8E-1369119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1172121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MESYHYSGWP LATNMAQCNS APNSDQLSPF SVPTTQTLPL ASDPASLQFS EFPLWPATIA  60
EDRVASASKS HSQAEKRRRD RINAQLATLR KLIPKSDKMD KAALLGSVVD HVKDLKRKAM  120
CVSKAITVPT ETDEVKIDFH EAKDESYTKV KILKENIIIK ASVCCDDRPE VFPELIQVLK  180
GLRLTAVKAD IASVGGRIKS ILVLCSKDSE ENSVCLSTLK QSLKSAVNKI ASLSVATNCP  240
TRSKRQRFFF PSHYVQP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G222700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0900460.0BT090046.1 Soybean clone JCVI-FLGm-3B13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141752.10.0hypothetical protein PHAVU_008G222700g
TrEMBLV7BBB10.0V7BBB1_PHAVU; Uncharacterized protein
STRINGXP_007141752.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.19e-48bHLH family protein