PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G231300.1
Common NamePHAVU_008G231300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 254aa    MW: 29005.1 Da    PI: 9.7934
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G231300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000155981123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H++ H
  Phvul.008G231300.1 59 YSCTFCKREFRSAQALGGHMNIH 81
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.24E-65686No hitNo description
Gene3DG3DSA:3.30.160.607.3E-45784IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1365986IPR007087Zinc finger, C2H2
SMARTSM003550.00725981IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-65982IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGSHYQYWMH VRREQIMNSQ PHKAPIIGDV RKNNWEERAF AEDATRRSLG WSMWPPRSYS  60
CTFCKREFRS AQALGGHMNI HRRDRARLKQ NLRAHHNYEP FSHHYHHQND VTIKSSLATT  120
ISTTRSLSCI STQQNCVILG QMGSPKSEQE RVVKAKEYSF KALGCSDFVE TSLSVGLTSM  180
FGQNSSPIVP CWDTPKISCK RLKNTISSLP LFLRPCSKDE GLAFQPLEIS LGLHHGIEDL  240
DLELRLGKQH KVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125481229superman protein
2l1o_A1e-125481229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G231300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150364e-54AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141854.10.0hypothetical protein PHAVU_008G231300g
TrEMBLV7BAG40.0V7BAG4_PHAVU; Uncharacterized protein
STRINGXP_007141854.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-26C2H2 family protein