PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G233800.1
Common NamePHAVU_008G233800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 204aa    MW: 23024.3 Da    PI: 8.9483
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G233800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-15144548
                        -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +++Ed++l+d+++ +G g+W++I++  g++R++k+c++rw++yl
  Phvul.008G233800.1  1 SKQEDQKLIDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWLNYL 44
                        689***************************************97 PP
2Myb_DNA-binding49.31.2e-155194247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        g + ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  Phvul.008G233800.1 51 GIFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 94
                        66779****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.604144IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-20151IPR009057Homeodomain-like
CDDcd001673.00E-10144No hitNo description
PfamPF002491.5E-13144IPR001005SANT/Myb domain
SMARTSM007174.0E-8146IPR001005SANT/Myb domain
SuperFamilySSF466898.98E-26191IPR009057Homeodomain-like
PROSITE profilePS5129425.3094599IPR017930Myb domain
SMARTSM007172.4E-144997IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2552100IPR009057Homeodomain-like
PfamPF002494.7E-145394IPR001005SANT/Myb domain
CDDcd001676.20E-115595No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
SKQEDQKLID YIRVHGEGCW RSIPKAAGLH RCGKSCRLRW LNYLRPDIKR GIFAEDEEDL  60
IIKLHALLGN RWSLIAGRLP GRTDNEVKNY WNSHIRRKLI KMGIDPNNHK PHQSVSFPHS  120
SSAEGASNTE SMNKDHRIPI FPVAATHHRI SFREEESAII SSPTLNLDLT IALPSSMIGA  180
LEEKAIQNSK STKTLDMEID LNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2619911108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G233800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904651e-151BT090465.1 Soybean clone JCVI-FLGm-4F17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141884.11e-150hypothetical protein PHAVU_008G233800g, partial
SwissprotQ9SZP18e-67MYB4_ARATH; Transcription repressor MYB4
TrEMBLV7BAJ21e-148V7BAJ2_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007141884.11e-149(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-69myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]