PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G235500.1
Common NamePHAVU_008G235500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 542aa    MW: 59533.6 Da    PI: 5.3412
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G235500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS433.81.3e-1321715341374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         lv+ L++cAeav+ g+++la+ l+++  +la+++g +m ++a++f++ALa+r+++        + p et +++ s+ l+    f+e sP+l
  Phvul.008G235500.1 171 LVHSLMACAEAVQFGNASLAEGLVKHAGNLAASQGGSMGKVASFFAQALARRIYG--------FYPHETLDSSYSDMLHT--HFYESSPYL 251
                         689****************************************************........56666665556666555..6******** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+h+taN+aIlea++ +++vH+iDf+++qGlQWpa++qaLa Rp+gpp +R+ g+g+p+ +  ++++l+++g +La++A++++++fef+ 
  Phvul.008G235500.1 252 KFAHFTANHAILEAFAAADTVHVIDFGLKQGLQWPAFMQALAVRPGGPPVFRLSGIGPPRLDdpDSDTLSQVGLKLAELARKVRIQFEFRG 342
                         ***********************************************************99999*************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         +v+++l+dl++++L+++ gE +aVn++++lhrll+++v++e+    vL+++k+++P++v+vveqea+hns+ Flerf+eal+yys+lfdsl
  Phvul.008G235500.1 343 FVCNSLADLDPSMLEIRAGEFVAVNSIFELHRLLARPVDIEK----VLETIKRIKPEIVTVVEQEANHNSPVFLERFTEALYYYSSLFDSL 429
                         ******************************************....********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvl 360
                         e ++++ see+ ++ +++lgr+i+nvvaceg+er+erhetl++Wr r++  GF++v+l+++a  qa++ll  ++  ++gyrvee++g+l+l
  Phvul.008G235500.1 430 EGSVAASSEEALVMAEMYLGRQICNVVACEGDERVERHETLGQWRGRFGLGGFEAVRLGSNAFRQARMLLGLYAegGKGYRVEENNGCLLL 520
                         *************************************************************************977899************ PP

                GRAS 361 gWkdrpLvsvSaWr 374
                         gW++rpLv+ +aWr
  Phvul.008G235500.1 521 GWHTRPLVASTAWR 534
                         *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.3E-243392IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.8E-2033103No hitNo description
PROSITE profilePS5098564.711145512IPR005202Transcription factor GRAS
PfamPF035144.6E-130171534IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MKREGMEDAN AVKGECSSSG KGKVVFEEEE NEDRLLAGVG YKVCSSNMVD VAHKLDQLEM  60
VMEGDGMSHL ANNTVHYDPT DLYGWVQNIL NNAPNHITAT NNNNAVIPSP LITVPENDLR  120
AIPLPYIEAY PQLENQNCHK QFKSSSSLFS PAISSDNVLP VVLMEEAGVH LVHSLMACAE  180
AVQFGNASLA EGLVKHAGNL AASQGGSMGK VASFFAQALA RRIYGFYPHE TLDSSYSDML  240
HTHFYESSPY LKFAHFTANH AILEAFAAAD TVHVIDFGLK QGLQWPAFMQ ALAVRPGGPP  300
VFRLSGIGPP RLDDPDSDTL SQVGLKLAEL ARKVRIQFEF RGFVCNSLAD LDPSMLEIRA  360
GEFVAVNSIF ELHRLLARPV DIEKVLETIK RIKPEIVTVV EQEANHNSPV FLERFTEALY  420
YYSSLFDSLE GSVAASSEEA LVMAEMYLGR QICNVVACEG DERVERHETL GQWRGRFGLG  480
GFEAVRLGSN AFRQARMLLG LYAEGGKGYR VEENNGCLLL GWHTRPLVAS TAWRLAPNGL  540
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6316553313378Protein SCARECROW
5b3h_A2e-6316553312377Protein SCARECROW
5b3h_D2e-6316553312377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G235500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141902.10.0hypothetical protein PHAVU_008G235500g
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLV7BBP60.0V7BBP6_PHAVU; Uncharacterized protein
STRINGXP_007141902.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0RGA-like 1