PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G240700.1
Common NamePHAVU_008G240700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 450aa    MW: 49939.8 Da    PI: 8.6702
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G240700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-1660104147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r rWT eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
  Phvul.008G240700.1  60 RERWTDEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 104
                         78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-1754108IPR009057Homeodomain-like
PROSITE profilePS5129420.88555109IPR017930Myb domain
TIGRFAMsTIGR015571.1E-1658107IPR006447Myb domain, plants
SMARTSM007174.7E-1359107IPR001005SANT/Myb domain
PfamPF002491.3E-1360103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-960100IPR009057Homeodomain-like
CDDcd001673.55E-1062105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MAIQGKSAFT RSRSGLPIGD EISLSPGVHS VADIPLHDQF SYGNDYALKV RKPYTITKQR  60
ERWTDEEHKK FLEALKLYGR AWRRIEEHVG TKTAVQIRSH AQKFFSKIVR ESSGNSTVLE  120
ESIEIPPPRP KRKPIHPYPR KLIEIPKKEI SNSDHTPRSN SLKSSDFGQE NNSPKSVLST  180
VVSENLGSSD SDTPTGSLSP VSSISGVPTN RFPLAGPKTS FEEEGSLPNS AHDEQPLVKL  240
ELFHKESVSN KDDAAEESSG RTLKLFGTTL LVTDTSKPFS LRTEPFKPVP AAATYLMQLQ  300
NGCSDLAEGP ASIVPRWTFS HNAPSVPLHR ETKGKHLYSN LGDFEHKEVQ KEGSWTGSNT  360
SSVNDGDNTD KSDDQAKSHV HCFSKRDGQL HFLGHTKPSE TSAIFELRVR AKTCGKGFVP  420
YKRCMAGREN QYSSVCDEER EEQRIKLSL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G240700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311810.0KT031181.1 Glycine max clone HN_CCL_152 MYB/HD-like transcription factor (Glyma02g40800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141962.10.0hypothetical protein PHAVU_008G240700g
TrEMBLV7BBW20.0V7BBW2_PHAVU; Uncharacterized protein
STRINGXP_007141962.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-65MYB_related family protein