PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G244300.1
Common NamePHAVU_008G244300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 402aa    MW: 45556.9 Da    PI: 10.2132
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G244300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.35e-17140228197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k +++s+v +  +l lp kf+ee   +k + ++++lede+g ++   +   +k+++  l++GW+ F+ +++L++gD +vF+l++ s+f 
  Phvul.008G244300.1 140 FIKSMVRSHVYSCFWLGLPSKFCEEQL-PK-TVFDMVLEDENGSEYVAVY--IGKRSG--LSGGWRAFALDHKLDDGDALVFELVEASRF- 223
                         89*********************8884.43.5579***************..455544..9***********************998999. PP

                         .EEEEE CS
                  B3  92 lvvkvf 97 
                          ++ ++
  Phvul.008G244300.1 224 -KIYIV 228
                         .55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-18133229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-21135229IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-23138229No hitNo description
PfamPF023623.6E-15140228IPR003340B3 DNA binding domain
SMARTSM010193.7E-21140231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.21140231IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAKSRTSNTY EEARKQRLEE NKKRFEDLGI SRISKNLNEI TSSAKKRQHH VPKPKPKNTN  60
GEVEPRRSSR VRNPVASYQE DVSIHLPALR KRSRSNSSTW GSYIARPLDE IKEATEEERL  120
CALEAAEALQ INMNSSNPSF IKSMVRSHVY SCFWLGLPSK FCEEQLPKTV FDMVLEDENG  180
SEYVAVYIGK RSGLSGGWRA FALDHKLDDG DALVFELVEA SRFKIYIVRA FPNLVEEKGK  240
DILVEEGNMH TTKVPKAKCN LESESKTKKL RQAAAYETNE SESSQEHIDK EVKPQGLNST  300
KQTKIYKKKT PKKSILSATA DSKGKVQMKT QNPKVSLELS NKTRKSKAIN AIDDSVELEK  360
KSFARDADRK LEKVELVEEA SKCVIQKTRK KTAPKFFRKK A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386399KTRKKTAPKFFRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G244300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-140AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142002.10.0hypothetical protein PHAVU_008G244300g
SwissprotQ9FHB23e-68Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLV7BC030.0V7BC03_PHAVU; Uncharacterized protein
STRINGXP_007142002.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124332328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-63B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]