PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G246000.2
Common NamePHAVU_008G246000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 251aa    MW: 27793.9 Da    PI: 6.3997
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G246000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.52.4e-2194144155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GVr+++ +grW+AeIrdp   ++rkr +lg+f+taeeAa  +++a+ kl+g
  Phvul.008G246000.2  94 SKFRGVRQRP-WGRWAAEIRDP---NRRKRLWLGTFDTAEEAATEYDKAAVKLKG 144
                         79********.**********8...335************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381235.7E-847250IPR017392AP2/ERF transcription factor ERF/PTI6
SuperFamilySSF541711.5E-2294153IPR016177DNA-binding domain
CDDcd000181.89E-3394152No hitNo description
PfamPF008473.5E-1494144IPR001471AP2/ERF domain
PROSITE profilePS5103224.30295152IPR001471AP2/ERF domain
SMARTSM003801.8E-3795158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-3195153IPR001471AP2/ERF domain
PRINTSPR003673.6E-1096107IPR001471AP2/ERF domain
PRINTSPR003673.6E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSVHSTVNLH PMNLATPNSH FDDNPPCKTK TKTQKRLLRI IITDHDATDS DSDDEQQQNN  60
PKARKVKREI TQITSKCRKP KKPPPSSEAA NGRSKFRGVR QRPWGRWAAE IRDPNRRKRL  120
WLGTFDTAEE AATEYDKAAV KLKGPNAVTN FPLTTPPPAA ASPFAAIDSF STDGGASYSD  180
LVASPTSVLT YDCDSTPFDS FPYGNVDALG FHIDAPLSLA DVDVALTCHH GKEEEAFDEF  240
DLDEFMKWPY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2096153361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-2096153664ATERF1
3gcc_A5e-2096153664ATERF1
5wx9_A3e-19941521372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G246000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142024.10.0hypothetical protein PHAVU_008G246000g
TrEMBLV7BAX80.0V7BAX8_PHAVU; Uncharacterized protein
STRINGXP_007142025.11e-158(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-28cytokinin response factor 4