PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G270500.2
Common NamePHAVU_008G270500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 453aa    MW: 49659.6 Da    PI: 6.5045
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G270500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.47.8e-25238292259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg++WrKYGqK+ kg+++pr+YYrCt++  Cpv    +r+aed +vv++tYeg+Hnh 
  Phvul.008G270500.2 238 ADGCQWRKYGQKMAKGNPCPRAYYRCTMSsACPV----QRCAEDRSVVITTYEGQHNHA 292
                         7***************************989995....67999***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-27222294IPR003657WRKY domain
SuperFamilySSF1182901.7E-22230294IPR003657WRKY domain
PROSITE profilePS5081123.652232294IPR003657WRKY domain
SMARTSM007749.3E-29237293IPR003657WRKY domain
PfamPF031061.9E-20239291IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEPSSNHAIP HPSSHPLLSF RGTPLHMDAL DFFPQKTKEI QDHDHTHHHQ TLHYHVDTSL  60
DLLTKNTGGN RSMEENEALE TVDEKSRFVA MVSELHQMNA ENQRLRELVD EMNNNCNALR  120
MQLINITQKQ HNQGNNGVSG EKEEMVPRPF LEMGVSEKEE QPSEEKVKVD LMHQCKGSDQ  180
KEIEDKLDCG RESSKARMEA DQQLSTKLSK LDQNSETLSM IKKARVSVRA RSDSTMIADG  240
CQWRKYGQKM AKGNPCPRAY YRCTMSSACP VQRCAEDRSV VITTYEGQHN HALPPTAQAM  300
AATTSAAASM LLSGSMPSSD GQINPTMLQS ASLPCSQNMA TLSASAPFPT ITLDLTQNPT  360
NQLGLLSPLL ARKFMSVPKI FGHSLCDQTK LAGLHESQGR DSSPSFANSF NAATAAITAD  420
PNFTAALVAA ITSVMGNSHN NSTGEEHCNN NA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-18224295175WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G270500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-107AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142322.10.0hypothetical protein PHAVU_008G270500g
TrEMBLV7BCW10.0V7BCW1_PHAVU; Uncharacterized protein
STRINGXP_007142321.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-71WRKY family protein