PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G275300.1
Common NamePHAVU_008G275300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 585aa    MW: 63099.2 Da    PI: 7.8312
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G275300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.3e-32229286260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Phvul.008G275300.1 229 DDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 286
                         8****************************************.***************85 PP
2WRKY106.21.7e-33404462159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Phvul.008G275300.1 404 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 462
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-27223287IPR003657WRKY domain
PROSITE profilePS5081123.686223287IPR003657WRKY domain
SuperFamilySSF1182902.75E-25224287IPR003657WRKY domain
SMARTSM007742.5E-34228286IPR003657WRKY domain
PfamPF031061.1E-24229285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37389464IPR003657WRKY domain
SuperFamilySSF1182902.09E-29396464IPR003657WRKY domain
PROSITE profilePS5081138.825399464IPR003657WRKY domain
SMARTSM007743.1E-39404463IPR003657WRKY domain
PfamPF031063.5E-26405462IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MDAAAEPGPS SELRLNGASE DPNRSGSGQN LTARYKLIAP AKLPISRSPC ITIPPGLSPT  60
SFLESPVLLS NMKVESSPTT GSLRKLQQTV HGSKAFAASA TFAVTTSCFS NNTVDDRKSS  120
FFEFKPLNRL NMVPADFNNR AIKQSTQVEG LGKAQSFVSS PLVESEIAVP ANELSLSSPV  180
QMVSSCPSAS VDVDLDDVNH KGNTATGLQA SHVDVRGSGL SVATEKTSDD GYNWRKYGQK  240
LVKGSEFPRS YYKCTHPNCE VKKLFERSHD GQITEIIYKG THDHPKPQPS CRYSTGTIMS  300
IQVERSDKGS SLAGLDDKAP SMYGQLSHAA EPNSASEPSH VATNGDGLEG VGFVSNRIGD  360
DADDDDPFSK RRKMELGNVD ITPVVKPIRE PRVVVQTLSE VDILDDGYRW RKYGQKVVRG  420
NPNPRSYYKC TNAGCPVRKH VERASHDPKA VITTYEGKHN HDVPAARNSS HDMAVAAAGQ  480
TRIKLEESDT ISLDLGMGIS SAAEHRSNAQ GKIMHSEFGN TQTHTSNSNF KFVHTTSAPV  540
YFGVLNNSSN PYGSRDNRSD GPALNHASYP CPQSMGRILM GPGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37229465878Probable WRKY transcription factor 4
2lex_A2e-37229465878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G275300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753500.0EU375350.1 Glycine max transcription factor (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142379.10.0hypothetical protein PHAVU_008G275300g
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLV7BBX90.0V7BBX9_PHAVU; Uncharacterized protein
STRINGXP_007142379.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-180WRKY family protein