PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G004200.1
Common NamePHAVU_009G004200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family DBB
Protein Properties Length: 237aa    MW: 26254.5 Da    PI: 6.7493
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G004200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.21.6e-08442537
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                         C+ +++ e++ fC  ++  lC++C  ++H+       H
  Phvul.009G004200.1  4 QCDVCDKMEATVFCPADEAALCRSCDRTIHHAnklatkH 42
                        7******99********************7443566666 PP
2zf-B_box31.73.2e-105692438
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                        + C+ ++ek++ lfC++++ llC++C l +H+   Ht
  Phvul.009G004200.1 56 PLCDICQEKRAYLFCQEDRALLCRECDLPIHRAneHT 92
                        68*****************************768865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.433147IPR000315B-box-type zinc finger
CDDcd000211.25E-6347No hitNo description
SMARTSM003361.8E-8447IPR000315B-box-type zinc finger
PfamPF006431.1E-5444IPR000315B-box-type zinc finger
SuperFamilySSF578454.12E-55091No hitNo description
SMARTSM003361.7E-1553100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.40953100IPR000315B-box-type zinc finger
CDDcd000218.20E-1056100No hitNo description
PfamPF006431.2E-85692IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MKIQCDVCDK MEATVFCPAD EAALCRSCDR TIHHANKLAT KHPRFPLIFP TSQDFPLCDI  60
CQEKRAYLFC QEDRALLCRE CDLPIHRANE HTQKHNRFLL TGVKLSATSL DSASSSTNCT  120
DTVTASEGKN GRSRTNRPRS ISHENLTSSW KAEDNVGSDT GSVSTSSISE YLIETIPGYC  180
FEELLDGSFA PTNGFCKKQN HDHRWAFQNQ DLVQLRTCLV GVKEIPNGGC YGCAVP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G004200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-165AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135935.11e-178hypothetical protein PHAVU_009G004200g
SwissprotQ9LQZ78e-60BBX21_ARATH; B-box zinc finger protein 21
TrEMBLV7AQT91e-177V7AQT9_PHAVU; Uncharacterized protein
STRINGXP_007135935.11e-177(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-55DBB family protein
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]