PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.009G004300.1

Common Name

PHAVU_009G004300g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

SRS

Protein Properties

Length: 218aa MW: 23929.7 Da PI: 8.7325

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G004300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	88.4	1.6e-27	14	66	4	56
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqql 56 +++CqdCGnqakk+C+++RCRtCCk++gf+C+th++stW p++krr+ q Phvul.009G004300.1 14 RGSKCQDCGNQAKKECSYSRCRTCCKNKGFKCQTHIRSTWTPVDKRRNTEQPP 66 5679*******************************************975543 PP
2	DUF702	75.2	1.9e-23	93	144	103	154
DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++P +s+a+frcv+v+s+dd+ +e+aYqt+v+igGhvf+GiLydqG+e+ Phvul.009G004300.1 93 MKFPGAANSMAMFRCVQVRSMDDAVNEVAYQTSVNIGGHVFSGILYDQGPEQ 144 34************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.4E-42	15	143	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.2E-23	17	59	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.0E-20	94	142	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MKRGTQGEEE VVSRGSKCQD CGNQAKKECS YSRCRTCCKN KGFKCQTHIR STWTPVDKRR 60 NTEQPPSPPH NFHGDVPQKH NQINPYSVSG LEMKFPGAAN SMAMFRCVQV RSMDDAVNEV 120 AYQTSVNIGG HVFSGILYDQ GPEQGYNHKG GSSSGLVDEQ QRNNLGLMNN ASIHSRDSSG 180 VTIASAGHGE PLFPPPPYPF PLASFRPGMP YFTYPRS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G004300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-120	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007135936.1	1e-163	hypothetical protein PHAVU_009G004300g
TrEMBL	V7ARI1	1e-162	V7ARI1_PHAVU; Uncharacterized protein
STRING	XP_007135936.1	1e-163	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	7e-43	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Phvul.009G004300.1
Entrez Gene	18618709