PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G004800.1
Common NamePHAVU_009G004800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 646aa    MW: 70926.8 Da    PI: 6.542
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G004800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox314.5e-103844211954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +e++ LAk++gLt +qV++WF N R +
  Phvul.009G004800.1 384 FEHflHPYPKDSEKTMLAKQTGLTRSQVSNWFINARVR 421
                         665559******************************88 PP
2BELL119.31.7e-38247318172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         e+q+lq+k akLls+l+eVd rYkqy++++q v+ssF++vag+g+akpYt+lAl++iS hFrcL+dai++qi
  Phvul.009G004800.1 247 EKQDLQRKLAKLLSMLDEVDSRYKQYYQKMQNVVSSFDVVAGCGAAKPYTALALQTISCHFRCLRDAISGQI 318
                         6899*******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-51165316IPR006563POX domain
PfamPF075261.6E-47171315IPR006563POX domain
PROSITE profilePS5007112.438362425IPR001356Homeobox domain
CDDcd000862.20E-13365426No hitNo description
SMARTSM003894.2E-10365429IPR001356Homeobox domain
SuperFamilySSF466891.97E-17366431IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28368431IPR009057Homeodomain-like
PfamPF059201.6E-18382421IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MATYYPCSSN QRGAVPMLCL REPLHNSYPE TPILPSNMTV YMNSGSYSEA LPGNSQQQNN  60
CFVIPSPSVG ASNSTVEQQE ILANIGGYPN GVHDFSAWRE GRSEMNHCSN FDSFLGANPS  120
LSANEVYQNG SSRDAGTRHS ENFPPVLHEA GHYLNKADFS FHGISSAGRT VPSSKYLKAV  180
QQLLDEVVDI RQAIKRPETR SYGTHENSTK NSKEGDEHLL NERSSVNVVP NSQASASNSS  240
CELSHTEKQD LQRKLAKLLS MLDEVDSRYK QYYQKMQNVV SSFDVVAGCG AAKPYTALAL  300
QTISCHFRCL RDAISGQIRA TRKRLGEHDA SGSNKGVGMA RLKYVDHQVR QQRAIQQLGM  360
MQHAWRPQRG LPESSVSILR AWLFEHFLHP YPKDSEKTML AKQTGLTRSQ VSNWFINARV  420
RLWKPMIEDM YKQDVSDADM DSTSSSENVS KATKSDVKIS NDTGDSQHCQ SPIVTDTDHS  480
GGQAKEDLGY DQVLDTKIMA STGLTSLISG GHEVETEHGS GKQNGEKRPN LDDCGLFSDN  540
MVVQSDGATN DRFVAVGPTC QMSEFERFKS GSGVSLTLGL QYCEGGNYLP GETHLSLVSM  600
RENGIYSSAA ADSTVGVQTA ELECVGAGNQ RQRFSSPHML HDFVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-18371428158Homeobox protein Meis1
4xrs_B7e-18371428158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G004800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135942.10.0hypothetical protein PHAVU_009G004800g
TrEMBLV7AUN80.0V7AUN8_PHAVU; Uncharacterized protein
STRINGXP_007135942.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-124BEL1-like homeodomain 6